Olivier Hanotte

Olivier Hanotte

Principal Scientist

The central theme of my research is the understanding at the genome level of the genetic adaptations of “tropical’’ livestock to their production environments. We aim to unravel the genetic control of functional diversity for their uses in breeding improvement programs in cattle, small ruminant and chicken. We studied both Mendelian and quantitative traits. We use as tools next generation sequencing (NGS) and high-density genome wide SNP chips microarrays genotyping. Our model includes livestock population selected intensively by human (productivity and morphological traits) as well as indigenous population, in the tropics, under natural selection (e.g. survival traits such as disease resistances). We use genome wide molecular approaches and bioinformatics and statistical analysis for the detection and the mapping of signature of selection. A major baseline element of our work is the understanding of the genetic history of our model species and livestock genetic resources characterization is an important component of our research strategy. 

My Projects

Genomic reference resource for African cattle

My Publications

ILRI publication cover

Genetic variation and demographic history of Sudan desert sheep reveal two diversified lineages

  • Salim, B.
  • Alasmari, S.
  • Mohamed, N.S.
  • Ahmed, M.-K.A.
  • Nakao, R.
  • Hanotte, Olivier H.

Whole genome sequencing reveals genetic diversity and heatstress adaptation in Nigerian indigenous chickens

  • Gheyas, A.A.
  • Rachman, M.
  • Bamidele, O.
  • Dessie, Tadelle
  • Smith, J.
  • Hanotte, Olivier H.

Phenotypic characterisation of African chickens raised in semi-scavenging conditions

  • Morris, K.M.
  • Sutton, K.
  • Girma, Mekonnen
  • Esatu, Wondmeneh
  • Solomon, Bersabhe
  • Dessie, Tadelle
  • Vervelde, L.
  • Psifidi, A.
  • Hanotte, Olivier H.
  • Banos, G.

Exploiting phenotypic plasticity in animal breeding

  • Kebede, Fasil Getachew
  • Komen, Hans
  • Dessie, Tadelle
  • Hanotte, Olivier H.
  • Kemp, Stephen J.
  • Barros, C.P.
  • Crooijmans, R.
  • Derks, M.
  • Alemu, S.W.
  • Bastiaansen, J.W.M.

In vitro antioxidant activities of plant polyphenol extracts and their combined effect with flaxseed on raw and cooked breast muscle fatty acid content, lipid health indices and oxidative stability in slow-growing Sasso chickens

  • Tadesse, D.
  • Retta, N.
  • Girma, Mekonnen
  • Ndiwa, Nicholas N.
  • Dessie, Tadelle
  • Hanotte, Olivier H.
  • Getachew, P.
  • Dannenberger, D.
  • Maak, S.

Fourth Report on Chicken Genes and Chromosomes 2022

  • Alfieri, James M.
  • Anthony, Nck
  • Arensburger, Peter
  • Athrey, Giridhar N.
  • Balacco, Jennifer
  • Balic, Adam
  • Bardou, Philippe
  • Barela, Paul
  • Bigot, Yves
  • Blackmon, Heath
  • Borodin, Pavel M.
  • Carroll, Rachel
  • Casono, Meya C.
  • Charles, Mathieu
  • Cheng, Hans
  • Chiodi, Maddie
  • Cigan, Lacey
  • Coghill, Lyndon M.
  • Crooijmans, Richard
  • Das, Neelabja
  • Davey, Sean
  • Davidian, Asya
  • Degalez, Fabien
  • Dekkers, Jack M.
  • Derks, Martijn
  • Diack, Abigail B.
  • Djikeng, Appolinaire
  • Drechsler, Yvonne Drechsler
  • Dyomin, Alexander
  • Fedrigo, Olivier
  • Fiddaman, Steven R.
  • Formenti, Giulio
  • Frantz, , Laurent A.F.
  • Fulton, Janet E.
  • Gaginskaya, Elena
  • Galkina, Svetlana
  • Gallardo, Rodrigo A.
  • Geibel, Johannes
  • Gheyas, Almas
  • Godinez, Cyrill John P.
  • Goodell, Ashton
  • Graves, Jennifer A.M.
  • Griffin, Darren K.
  • Haase, Bettina
  • Han Jianlin
  • Hanotte, Olivier H.
  • Henderson, Lindsay J.
  • Zhuo-Cheng Hou
  • Howe, Kerstin Howe
  • Lan Huynh
  • Ilatsia, Evans
  • Jarvis, Erich
  • Johnson, Sarah M.
  • Kaufman, Jim
  • Kelly, Terra
  • Kemp Stephen J.
  • Kern, Colin
  • Keroack, Jacob H.
  • Klopp, Christophe
  • Lagarrigue, Sandrine
  • Lamont, Susan J.
  • Lange, Margaret
  • Lanke, Anika
  • Larkin, Denis M.
  • Larson, Greger
  • Layos, John King N.
  • Lebrasseur, Ophélie
  • Malinovskaya, Lyubov P.
  • Martin, Rebecca J.
  • Martin Cerezo, Maria Luisa
  • Mason, Andrew S.
  • McCarthy, Fiona M.
  • McGrew, Michael J.
  • Mountcastle, Jacquelyn
  • Muhonja, Christine Kamidi
  • Muir, William
  • Muret, Kévin
  • Murphy, Terence
  • Ng'ang'a, Ismael
  • Nishibori, Masahide
  • O'Connor, Rebecca E.
  • Ogugo, Moses
  • Okimoto, Ron
  • Ouko, Ochieng
  • Patel, Hardip R. Patel
  • Perini, Francesco
  • Pigozzi, María Inés
  • Potter, Krista C.
  • Price, Peter D.
  • Reimer, Christian
  • Rice, Edward S.
  • Rocos, Nicolas
  • Rogers, Thea F.
  • Saelao, Perot
  • Schauer, Jens
  • Schnabel, Robert
  • Schneider, Valerie
  • Simianer, Henner
  • Smith, Adrian
  • Stevens, Mark P.
  • Stiers, Kyle
  • Tiambo, Christian Keambou
  • Tixier-Boichard, Michele
  • Torgasheva, Anna A.
  • Tracey, Alan
  • Tregaskes, Clive A.
  • Vervelde, Lonneke
  • Ying Wang
  • Warren, Wesley C.
  • Waters, Paul D. Waters
  • Webb, David
  • Weigend, Steffen
  • Wolc, Anna
  • Wright, Alison E.
  • Wright, Dominic
  • Zhou Wu
  • Yamagata, Masahito
  • Chentao Yang
  • Zhong-Tao Yin
  • Young, Michelle C.
  • Guojie Zhang
  • Bingru Zhao
  • Huaijun Zhou